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Gene name
Human disease related genes
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UMAP gene cluster
Pig tissue group category (RNA)
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Reproductive system diseases
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Subclass
Class
Biological process
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Disease
Keyword
Chromosome
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
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18
MT
Unmapped
X
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External id
Variability
Variable
Not variable
Tissue
Any
Adipose tissue
Brain
Cartilage
Heart
Kidney
Large intestine
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Skin
Small intestine
Stomach 1
Upper respiratory system
Cluster
1 - Brain neurotransmission
2 - Brain neurotransmission
3 - Brain cellular structure
4 - Brain development
5 - Intracellular signalling
6 - Brain uncharacterized
7 - Retinal
8 - Neurohormonal
9 - Testis spermatogenesis
10 - Housekeeping transcription
11 - Testis uncharacterized
12 - Metabolic
13 - Testis sperm
14 - Low abundant uncharacterized
15 - Testis uncharacterized
16 - Aorta uncharacterized
17 - Cilium structure
18 - Low abundant uncharacterized
19 - Housekeeping mitochondrial
20 - Hormonal
21 - Low abundant uncharacterized
22 - Housekeeping transcription
23 - Cilium structure
24 - Low abundant uncharacterized
25 - Low abundant uncharacterized
26 - Low abundant uncharacterized
27 - Low abundant uncharacterized
28 - Housekeeping mitochondrial translation
29 - Male tissue bacterial defense
30 - Housekeeping structural
31 - Housekeeping uncharacterized
32 - Transport
33 - Lens
34 - Prostate uncharacterized
35 - Low abundant uncharacterized
36 - Receptors uncharacterized
37 - Olfactory bulb
38 - Lung and thyroid development
39 - Kidney transport
40 - Testis
41 - Low abundant uncharacterized
42 - Low abundant uncharacterized
43 - Breast uncharacterized
44 - Housekeeping
45 - Thymus uncharacterized
46 - Skeletal muscle contraction
47 - Spleen uncharacterized
48 - Low abundant uncharacterized
49 - Heart contraction
50 - Muscle contraction
51 - Liver and kidney
52 - Housekeeping
53 - Housekeeping mitochondrial
54 - Interferons
55 - Low abundant uncharacterized
56 - Low abundant uncharacterized
57 - Skin
58 - Immune cells
59 - Squamous epithelium
60 - Not detected
61 - Enzymes and secretion
62 - Squamous epithelium
63 - Small intestine
64 - Gastrointestinal
65 - Epithelium
66 - Housekeeping mRNA
67 - Gastrointestinal
68 - Housekeeping protein processing
69 - Housekeeping
70 - Housekeeping
71 - Housekeeping regulation
72 - Digestive and respiratory defense
73 - Housekeeping cell cycle
74 - Extracellular matrix
75 - Housekeeping
76 - Housekeeping regulation
77 - Housekeeping defense
78 - Lymphoid T cells
79 - Lymphoid myeloid
80 - Heart uncharacterized
81 - Vasculature and connective tissue
82 - Lymphoid B cell
83 - Not detected
84 - Epithelium transcription regulation
Tissue group
Any
Adipose tissue
Adrenal gland
Aorta
Bone marrow
Brain
Breast
Cartilage
Cervix
Choroid plexus
Cornea
Ductus deferens
Dura mater
Endometrium
Epididymis
Esophagus
Fallopian tube
Gallbladder
Heart
Kidney
Large intestine
Lens
Liver
Lung
Lymphoid tissue
Male glands
Mesothelial tissue
Mouth
Ovary
Penis
Pineal gland
Pituitary gland
Retina
Salivary gland
Skeletal muscle
Skin
Small intestine
Smooth muscle
Stomach
Synovial tissue
Testis
Thyroid gland
Upper respiratory system
Urinary bladder
Vagus nerve
Category
Tissue enriched
Group enriched
Tissue enhanced
Low tissue specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Brain region
Any
Amygdala
Basal ganglia
Cerebellum
Cerebral cortex
Corpus callosum
Hippocampal formation
Hypothalamus
Midbrain
Olfactory region
Pituitary gland
Pons and medulla
Retina
Spinal cord
Thalamus
Category
Region enriched
Group enriched
Region enhanced
Low region specificity
Not detected
Detected in all
Detected in many
Detected in some
Detected in single
Is highest expressed
Column
Gene
Position
Tissue specific score
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THE PIG PROTEOME
THE PIG ATLAS
TISSUE SPECIFIC PROTEOME
UMAP GENE CLUSTERING
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89 GENES FOUND
Gene
Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
UMAP cluster
Within tissue variation
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1.
Select data columns:
Gene
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Gene
i
Gene name, if available.
Gene synonym (Human ortholog)
Ensembl gene id
Ensembl gene id (Proteincoding human ortholog)
Gene description
Uniprot accession (Human ortholog)
Chromosome
Chromosome position
Related human disease
RNA category pig
Expand
RNA pig tissue group specificity
RNA pig tissue group distribution
RNA pig tissue group specificity score
RNA pig tissue group specific NX
RNA pig brain regional specificity
RNA pig brain regional distribution
RNA pig brain regional specificity score
RNA pig brain regional specific pTPM
Annotation
Expand
UMAP cluster
Within tissue variation
Pig Tissue RNA
Expand
Abdominal adipose tissue [NX]
Adrenal gland [NX]
Amygdala [NX]
Aorta [NX]
Bone marrow [NX]
Breast [NX]
Bronchus [NX]
Bulbourethral gland [NX]
Caudate [NX]
Cecum [NX]
Cerebellum [NX]
Cervix [NX]
Choroid plexus [NX]
Cingulate cortex [NX]
Colon [NX]
Cornea [NX]
Corpus callosum [NX]
Dorsal hippocampus [NX]
Dorsal spinal cord [NX]
Ductus deferens [NX]
Duodenum [NX]
Dura mater [NX]
Ear cartilage [NX]
Endometrium 1 [NX]
Entorhinal cortex [NX]
Epididymis [NX]
Esophagus [NX]
Facial adipose tissue [NX]
Fallopian tube [NX]
Gallbladder [NX]
Heart atrium [NX]
Heart valve [NX]
Heart wall [NX]
Hypothalamus [NX]
Ileum [NX]
Insular cortex [NX]
Jejunum [NX]
Joint cartilage [NX]
Kidney (cortex) [NX]
Kidney (medulla) [NX]
Larynx [NX]
Lens [NX]
Lip [NX]
Liver [NX]
Lung [NX]
Lymph node [NX]
Medulla [NX]
Midbrain [NX]
Motor cortex [NX]
Nasopharynx epithelium [NX]
Occipital cortex [NX]
Olfactory bulb [NX]
Olfactory epithelium [NX]
Oral mucosa [NX]
Ovary [NX]
Penis [NX]
Periaqueductal gray [NX]
Peritoneum [NX]
Pineal gland [NX]
Pituitary gland [NX]
Pleura [NX]
Pons [NX]
Prefrontal cortex [NX]
Prostate [NX]
Putamen [NX]
Rectum [NX]
Retina [NX]
Retrosplenial cortex [NX]
Salivary gland [NX]
Seminal vesicle [NX]
Septum [NX]
Skeletal muscle [NX]
Skin (back) [NX]
Skin (groin) [NX]
Smooth muscle (intestine) [NX]
Somatosensory cortex [NX]
Spleen [NX]
Stomach (lower) [NX]
Stomach (upper) [NX]
Subcutaneous adipose tissue [NX]
Subiculum [NX]
Substantia nigra [NX]
Superior colliculi [NX]
Synovial tissue [NX]
Temporal cortex [NX]
Testis [NX]
Thalamus [NX]
Thymus [NX]
Thyroid gland [NX]
Tongue [NX]
Tonsil [NX]
Trachea [NX]
Urethral gland [NX]
Urinary bladder [NX]
Vagus nerve [NX]
Ventral hippocampus [NX]
Ventral pallidum [NX]
Ventral spinal cord [NX]
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Gene
i
Gene name, if available.
Ensembl
x
Human ortholog
x
Gene description
x
RNA pig tissue group specificity
x
RNA pig tissue group distribution
x
RNA pig tissue group specific NX
x
AMHR2
ENSSSCG00000000271
ENSG00000135409
Anti-Muellerian hormone type-2 receptor precursor
Tissue enriched
Detected in many
thyroid gland:
58.3
AVPR1A
ENSSSCG00000033383
ENSG00000166148
Arginine vasopressin receptor 1A
Tissue enriched
Detected in all
adrenal gland:
79.8
AVPR1B
ENSSSCG00000015639
ENSG00000198049
Arginine vasopressin receptor 1B
Tissue enriched
Detected in all
pituitary gland:
30.1
BSX
ENSSSCG00000015139
ENSG00000188909
Brain specific homeobox
Tissue enriched
Detected in some
pineal gland:
49.8
C14orf37
ENSSSCG00000005071
ENSG00000139971
Chromosome 14 open reading frame 37
Tissue enriched
Detected in many
pineal gland:
113.7
CALN1
ENSSSCG00000007730
ENSG00000183166
Calneuron 1
Tissue enriched
Detected in some
adrenal gland:
82.4
CCBE1
ENSSSCG00000004907
ENSG00000183287
Collagen and calcium binding EGF domains 1
Tissue enriched
Detected in many
adrenal gland:
69.4
CGA
ENSSSCG00000025434
ENSG00000135346
Glycoprotein hormones alpha chain
Tissue enriched
Detected in some
pituitary gland:
401.1
CHGA
ENSSSCG00000002456
ENSG00000100604
Chromogranin-A precursor
Tissue enriched
Detected in some
adrenal gland:
301.0
CHRNA9
ENSSSCG00000024428
ENSG00000174343
Neuronal acetylcholine receptor subunit alpha-9 precursor
Tissue enriched
Detected in some
adrenal gland:
45.9
CNGB3
ENSSSCG00000006134
ENSG00000170289
Cyclic nucleotide gated channel beta 3
Tissue enriched
Detected in some
pineal gland:
110.0
CNST
ENSSSCG00000010882
ENSG00000162852
Consortin, connexin sorting protein
Tissue enriched
Detected in all
pineal gland:
78.6
CNTN4
ENSSSCG00000011527
ENSG00000144619
Contactin 4
Tissue enriched
Detected in many
pineal gland:
89.6
CRABP1
ENSSSCG00000021873
ENSG00000166426
Cellular retinoic acid-binding protein 1
Tissue enriched
Detected in many
pineal gland:
321.9
CYB5B
ENSSSCG00000033944
ENSG00000103018
Cytochrome b5 type B
Tissue enriched
Detected in all
adrenal gland:
111.6
CYP21A2
ENSSSCG00000001428
ENSG00000231852
Steroid 21-hydroxylase
Tissue enriched
Detected in many
adrenal gland:
367.3
DBH
ENSSSCG00000005742
ENSG00000123454
Dopamine beta-hydroxylase
Tissue enriched
Detected in some
adrenal gland:
96.9
DLL3
ENSSSCG00000002987
ENSG00000090932
Delta like canonical Notch ligand 3
Tissue enriched
Detected in some
adrenal gland:
57.4
ESM1
ENSSSCG00000016900
ENSG00000164283
Endothelial cell specific molecule 1
Tissue enriched
Detected in many
pineal gland:
129.4
ETV3L
ENSSSCG00000006460
ENSG00000253831
ETS variant 3 like
Tissue enriched
Detected in some
pineal gland:
133.6
FAM189A2
ENSSSCG00000005249
ENSG00000135063
Family with sequence similarity 189 member A2
Tissue enriched
Detected in many
thyroid gland:
101.3
FOXE1
ENSSSCG00000005369
ENSG00000178919
Forkhead box E1
Tissue enriched
Detected in some
thyroid gland:
117.2
FSHB
ENSSSCG00000013328
ENSG00000131808
Follitropin subunit beta
Tissue enriched
Detected in many
pituitary gland:
353.5
GAL
ENSSSCG00000012883
ENSG00000069482
Galanin peptides preproprotein
Tissue enriched
Detected in some
adrenal gland:
101.7
GH1
ENSSSCG00000034212
ENSG00000136488,ENSG00000204414,ENSG00000213218,ENSG00000259384
Somatotropin
Tissue enriched
Detected in some
pituitary gland:
738.3
GHRHR
ENSSSCG00000016673
ENSG00000106128
Growth hormone-releasing hormone receptor
Tissue enriched
Detected in some
pituitary gland:
29.1
HSPD1
ENSSSCG00000016077
60 kDa heat shock protein, mitochondrial
Tissue enriched
Detected in all
adrenal gland:
175.5
HSPE1
ENSSSCG00000016078
10 kDa heat shock protein, mitochondrial
Tissue enriched
Detected in all
adrenal gland:
211.1
HYKK
ENSSSCG00000001755
ENSG00000188266
Hydroxylysine kinase
Tissue enriched
Detected in all
pineal gland:
40.3
IGSF1
ENSSSCG00000012667
ENSG00000147255
Immunoglobulin superfamily member 1
Tissue enriched
Detected in some
pituitary gland:
94.6
INS
ENSSSCG00000033740
ENSG00000254647
Insulin Insulin B chain Insulin A chain
Tissue enriched
Detected in some
adrenal gland:
25.3
IYD
ENSSSCG00000004093
ENSG00000009765
Iodotyrosine deiodinase 1 precursor
Tissue enriched
Detected in many
thyroid gland:
295.1
LHX3
ENSSSCG00000034657
ENSG00000107187
LIM/homeobox protein Lhx3
Tissue enriched
Detected in some
pituitary gland:
34.8
LHX4
ENSSSCG00000015536
ENSG00000121454
LIM homeobox 4
Tissue enriched
Detected in some
pineal gland:
62.6
LRRC52
ENSSSCG00000029977
ENSG00000162763
Leucine rich repeat containing 52
Tissue enriched
Detected in some
pineal gland:
127.5
MC2R
ENSSSCG00000039227
ENSG00000185231
Adrenocorticotropic hormone receptor
Tissue enriched
Detected in some
adrenal gland:
59.6
na
ENSSSCG00000004911
Tissue enriched
Detected in some
pituitary gland:
34.0
na
ENSSSCG00000005954
ENSG00000253117
Tissue enriched
Detected in some
pineal gland:
19.5
na
ENSSSCG00000009000
Tissue enriched
Detected in some
pineal gland:
34.1
na
ENSSSCG00000026512
ENSG00000110680
Calcitonin gene-related peptide 2 precursor
Tissue enriched
Detected in single
thyroid gland:
433.0
na
ENSSSCG00000027026
Tissue enriched
Detected in many
adrenal gland:
99.1
na
ENSSSCG00000030140
Tissue enriched
Detected in single
pituitary gland:
5.9
na
ENSSSCG00000031086
ENSG00000104826
Lutropin subunit beta
Tissue enriched
Detected in some
pituitary gland:
196.2
na
ENSSSCG00000031563
ENSG00000160882,ENSG00000179142
Tissue enriched
Detected in some
adrenal gland:
437.0
na
ENSSSCG00000031566
Tissue enriched
Detected in some
pituitary gland:
7.9
na
ENSSSCG00000031971
Tissue enriched
Detected in single
adrenal gland:
1.9
na
ENSSSCG00000032659
ENSG00000196433
Tissue enriched
Detected in some
pineal gland:
172.2
na
ENSSSCG00000033642
Tissue enriched
Detected in some
pituitary gland:
31.2
na
ENSSSCG00000033666
Tissue enriched
Detected in single
pituitary gland:
2.9
na
ENSSSCG00000034048
Tissue enriched
Detected in some
pineal gland:
4.8
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